PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P20970_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 251aa    MW: 26717.5 Da    PI: 10.1509
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P20970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.61.3e-304107199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C++lr++C+++C+++p++     p++q++++a+++k++G++ +++l++a  e+ r+++++sl++eA+ r+ +PvyG+vg+++++
  GSMUA_Achr1P20970_001   4 SCNGCRILRKACTDGCTIRPCLqwiknPEAQANATAFLAKFYGRAGLVNLINAGTEHLRPAIFRSLLFEACGRIVNPVYGSVGLLWSG 91 
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaelallke 99 
                            ++ql+q+++e++l ++
  GSMUA_Achr1P20970_001  92 SWQLCQAAVEAVLKGA 107
                            **********998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4263109IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRKSCNGCRI LRKACTDGCT IRPCLQWIKN PEAQANATAF LAKFYGRAGL VNLINAGTEH  60
LRPAIFRSLL FEACGRIVNP VYGSVGLLWS GSWQLCQAAV EAVLKGAPII QISSDSAAGA  120
IPAFKAHDIR HVSKNLSAGG VPGDLHEVAR KSRTRFKRSA GSPAALVVSK PGLFRRAARQ  180
ETEEEASRED GSAFSAEGSH VILGEPEGVR LDLRLGLEPE NRTGERGAEA KVRGASPSDA  240
RPVGPRLSLA A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413952.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8862e-74LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM0S1Q50.0M0S1Q5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P20970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-74LOB domain-containing protein 41